rNMR functions

Description

A list of rNMR functions with brief descriptions is displayed below.

File

cf

convert spectra to rNMR's default format

ca

convert ASCII spectra to rNMR's default format

export

export rNMR data tables

fc

close an open spectrum

fo

open a spectrum

fs

sort files

gui

display rNMR menus

import

import rNMR data tables

rb

restore backup workspace

ss

switch to another open spectrum

wl

load an R workspace

ws

save an R workspace

Edit

ep

modify rNMR's default settings

pe

edit peak list

rd

redo last undo

re

edit the ROI table

se

edit ROI summary

ud

undo last action

Plotting

co

display the color manipulation GUI

ct

display the plot options GUI

ctd

lower contours

ctu

raise contours

da

automatically choose plot type

dd

refresh main spectrum

di

draw image plot

dp

draw 3D perspective plot

dr

draw contour plot

drf

draw filled contour plot

Perspective plots

per

display the perspective plot GUI

rotc

rotate perspective plot clockwise

rotcc

rotate perspective plot counter clockwise

rotd

rotate perspective plot down

rotu

rotate perspective plot up

spin

spin perspective plot

View

ol

display the overlay GUI

pj

1D projection/slice GUI

pjv

toggle 1D projection display

vp

vertical position for 1D spectra, slices/projections

vpd

decrease vertical position for 1D spectra, slices/projections

vpu

increase vertical position for 1D spectra, slices/projections

vs

view slice

Zoom

delta

get chemical shift ranges

loc

get chemical shifts

pd

pan down

pl

pan left

pr

pan right

pu

pan up

pz

zoom to a point

zc

center window on a peak

zf

zoom full

zi

zoom in

zm

display the zoom GUI

zo

zoom out

zp

zoom previous

zz

zoom in on a manually selected region

Tools

sr

display custom library GUI

ed

extract data

mmcd

open MMCD homepage

sr

display chemical shift referencing GUI

Peak picking

nf

set peak picking noise filter

pa

pick full spectrum

pDel

clear peak list

ph

manually pick spectrum

pm

peak pick the maximum intensity within a region

pp

display peak picking GUI

pReg

peak pick a region

pv

toggle peak display

pw

pick current window

rp

pick inside/outside ROIs

Batch peak picking

paAll

pick full spectrum in all files

pDelAll

clear all peak lists

pwAll

pick current window in all files

rpAll

pick inside/outside ROIs in all files

ROIs

ra

automatically draw ROIs for window

rc

center active ROIs

rcd

contract active ROIs in the direct dimension

rci

contract active ROIs in the indirect dimension

rDel

delete ROIs

red

expand active ROIs in the direct dimension

rei

expand active ROIs in the indirect dimension

rmd

move active ROIs down (downfield indirect dimension)

rml

move active ROIs left (downfield direct dimension)

rmr

move active ROIs right (upfield direct dimension)

rmu

move active ROIs up (upfield indirect dimension)

rn

create new ROIs by hand

roi

display the ROI GUI

rr

rename active ROIs

rs

activate/deactivate ROIs from a list or plot window

rsf

select files to display in the multiple file window

rsAll

activate all ROIs

rdAll

deactivate all ROIs

rSum

generate ROI summary

rv

toggle ROI display in the main plot window

rvm

open ROI multiple file window

rvs

open ROI subplot window

Author(s)

Ian A. Lewis ialewis@nmrfam.wisc.edu, Seth C. Schommer schommer@nmrfam.wisc.edu

See Also

gui for displaying rNMR menus; rNMR for other rNMR help topics.